Single-cell sequencing analysis is applicable at any stage of drug development,from early discovery and preclinical animal studies through to clinical trials and reverse translation.
\nBy profiling individual cells,researchers can identify rare cell populations,characterize immune responses,and uncover mechanisms of drug action that bulk methods would obscure. Whether you are evaluating a candidate therapy or analyzing clinical samples post-treatment,our single-cell sequencing services are designed to scale with your program.
"},{"faq_question":"What type of single-cell sequencing do you offer? ","faq_answer":"As a 10X Genomics Certified Service Provider,CellCarta offers scRNA-seq,CITE-seq,repertoire profiling,and immune profiling on the Chromium X single cell sequencing platform.
\nThese assays enable simultaneous readout of whole transcriptome data,protein expression,and TCR or BCR repertoire information. Workflows include 5' Single Cell Immune Profiling,3' Single Cell Gene Expression,and Flex Fixed RNA Profiling,giving you the flexibility to match assay depth to your specific study objectives.
"},{"faq_question":"What sample types are compatible? ","faq_answer":"Our single cell sequencing platforms are compatible with a range of clinical sample types,including cryopreserved PBMCs,lysed whole blood,fresh PBMCs,cell lines,and fixed samples. Both solid and liquid biopsy inputs are supported.
\nFor samples requiring upstream preparation,CellCarta offers integrated immunology services including FACS-based cell sorting,magnetic enrichment,dead cell removal,cell culture,and compound treatment,all performed in-house prior to sequencing.
"},{"faq_question":"What single-cell sequencing platform do you use?","faq_answer":"Single cell sequencing analysis is performed using CellEngine,CellCarta's proprietary software,which mirrors familiar flow cytometry analysis workflows.
\nDeliverables include raw FASTQ files,summary QC reports,10X Cell Ranger outputs (web summary,Loupe,and H5 files),slide decks,and written reports. Interactive visualization tools including tSNE and UMAP clustering are available through CellEngine. Custom bioinformatics services are also offered for studies requiring specialized analysis.
"},{"faq_question":"What are the clinical applications of single-cell sequencing?","faq_answer":"Single cell sequencing services support a broad range of clinical applications,including immunotherapy,cell therapy,protein degradation studies,and vaccine development. The technology enables high-resolution characterization of immune cell populations,T cell and B cell receptor diversity,and gene expression at the single-cell level.
\nOur team works with you to tailor our single-cell sequencing services to your specific therapeutic area and study stage.
"}]}#-supreme-cellcarta-featured-resources-16-144{cards-data:[{"image_url":"\/wp-content\/uploads\/2026\/05\/webinar.jpg","card_type":"Webinar","date":"Feb 12","reading_time":"Reading Time - 5 minutes","title":"Resources Title Goes Here","description":"Lorem ipsum dolor sit amet,consectetuer adipiscing elit. Aenean commodo ligula eget dolor.","url":"#"},{"image_url":"\/wp-content\/uploads\/2026\/05\/webinar-2.jpg","card_type":"Webinar","date":"Feb 12","reading_time":"Reading Time - 5 minutes","title":"Resources Title Goes Here","description":"Lorem ipsum dolor sit amet,consectetuer adipiscing elit. Aenean commodo ligula eget dolor.","url":"#"},{"image_url":"\/wp-content\/uploads\/2026\/05\/webinar-3.jpg","card_type":"Webinar","date":"Feb 12","reading_time":"Reading Time - 5 minutes","title":"Resources Title Goes Here","description":"Lorem ipsum dolor sit amet,consectetuer adipiscing elit. Aenean commodo ligula eget dolor.","url":"#"}]}#-supreme-cellcarta-service-blocks-45-176{blocks-data:[{"image":"https://cellcarta.com/wp-content/uploads/2026/07/CellCarta-808-scaled.jpg","image_alt":"","title":"Next-Generation Sequencing (NGS)","description":"Precise,high-throughput analysis of genetic material with both speed and scalability. ","button_text":"Discover","button_url":"/capabilities/genomics/sequencing-services/ngs/","button_target":"_self"},{"image":"https://cellcarta.com/wp-content/uploads/2026/06/Flow-Cytometry-Services-118.jpg","image_alt":"","title":"Flow Cytometry","description":"Single-cell analysis of key biomarkers to support your immune monitoring studies.","button_text":"Discover","button_url":"/platforms/flow-cytometry/","button_target":"_self"},{"image":"https://cellcarta.com/wp-content/uploads/2026/06/Immunoassay-Services-hero-9.jpg","image_alt":"","title":"Immunoassay Platforms ","description":"A portfolio of platforms for immune monitoring and therapy development.","button_text":"Discover","button_url":"/capabilities/immunoassay-services/","button_target":"_self"}]}#-supreme-cellcarta-tab-content-11-144{tabs-data:[{"tab_title":"Tailored Sequencing ","content_title":"","content_body":"As a 10X Genomics Certified Service Provider,several different omics readouts are possible. CellCarta offers the following services,suited to studies at any stage:
\nOur workflows adapt to your study’s needs,and include:
\nOur single-cell RNA sequencing assays can be supported with various upstream immunology services to ensure your experimental needs are met with the highest standard of quality. These services include:
\nSingle-cell sequencing analysis is done on our CellEngine software,mirroring traditional flow cytometry analysis. Our software uses familiar interactive visualization tools and supports tSNE and UMAP clustering.
\nWe offer a range of study deliverables,including:
\nWhen needed,custom bioinformatics services are also available.
","tab_image":"https://cellcarta.com/wp-content/uploads/2026/06/Advanced-analysis-tab-296.jpg","image_alt":""},{"tab_title":"Sample type","content_title":"","content_body":"Our single-cell sequencing platforms can analyze a variety of clinical sample types,including both solid tissue and liquid biopsy samples. These include:
\nOur single-cell sequencing services will adapt and optimize to your study’s specifications,no matter your matrix of choice.
","tab_image":"https://cellcarta.com/wp-content/uploads/2026/06/Assays-by-Mutations-10-IMG_2181.jpg","image_alt":""}]}